GaussianProcesses

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## weka.classifiers.functions
Class GaussianProcesses

    java.lang.Object
      weka.classifiers.Classifier
          weka.classifiers.functions.GaussianProcesses

All Implemented Interfaces:
  java.io.Serializable, java.lang.Cloneable, IntervalEstimator, CapabilitiesHandler, OptionHandler, RevisionHandler, TechnicalInformationHandler

    public class GaussianProcesses

extends Classifier
implements OptionHandler, IntervalEstimator, TechnicalInformationHandler

Implements Gaussian Processes for regression without hyperparameter-tuning. For more information see
David J.C. Mackay (1998). Introduction to Gaussian Processes. Dept. of Physics, Cambridge University, UK.

BibTeX:

     @misc{Mackay1998,
        address = {Dept. of Physics, Cambridge University, UK},
        author = {David J.C. Mackay},
        title = {Introduction to Gaussian Processes},
        year = {1998},
        PS = {http://wol.ra.phy.cam.ac.uk/mackay/gpB.ps.gz}
     }

Valid options are:

     -D
      If set, classifier is run in debug mode and
      may output additional info to the console

     -L <double>
      Level of Gaussian Noise.
      (default: 1.0)

     -N
      Whether to 0=normalize/1=standardize/2=neither.
      (default: 0=normalize)

     -K <classname and parameters>
      The Kernel to use.
      (default: weka.classifiers.functions.supportVector.PolyKernel)

     Options specific to kernel weka.classifiers.functions.supportVector.RBFKernel:

     -D
      Enables debugging output (if available) to be printed.
      (default: off)

     -no-checks
      Turns off all checks - use with caution!
      (default: checks on)

     -C <num>
      The size of the cache (a prime number), 0 for full cache and
      -1 to turn it off.
      (default: 250007)

     -G <num>
      The Gamma parameter.
      (default: 0.01)

Version:
  $Revision: 1.8 $
Author:
  Kurt Driessens (kurtd@cs.waikato.ac.nz)
See Also:
  Serialized Form

Field Summary
`static int` | `FILTER_NONE` no filter
`static int` | `FILTER_NORMALIZE` normalizes the data
`static int` | `FILTER_STANDARDIZE` standardizes the data
`static Tag[]` | `TAGS_FILTER` The filter to apply to the training data

Constructor Summary
`GaussianProcesses()` the default constructor

Method Summary
`void` | `buildClassifier(Instances insts)` Method for building the classifier.
`double` | `classifyInstance(Instance inst)` Classifies a given instance.
`java.lang.String` | `filterTypeTipText()` Returns the tip text for this property
`Capabilities` | `getCapabilities()` Returns default capabilities of the classifier.
`SelectedTag` | `getFilterType()` Gets how the training data will be transformed.
`Kernel` | `getKernel()` Gets the kernel to use.
`double` | `getNoise()` Get the value of noise.
`java.lang.String[]` | `getOptions()` Gets the current settings of the classifier.
`java.lang.String` | `getRevision()` Returns the revision string.
`double` | `getStandardDeviation(Instance inst)` Gives the variance of the prediction at the given instance
`TechnicalInformation` | `getTechnicalInformation()` Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.
`java.lang.String` | `globalInfo()` Returns a string describing classifier
`java.lang.String` | `kernelTipText()` Returns the tip text for this property
`java.util.Enumeration` | `listOptions()` Returns an enumeration describing the available options.
`static void` | `main(java.lang.String[] argv)` Main method for testing this class.
`java.lang.String` | `noiseTipText()` Returns the tip text for this property
`double[][]` | `predictInterval(Instance inst, double confidenceLevel)` Predicts a confidence interval for the given instance and confidence level.
`void` | `setFilterType(SelectedTag newType)` Sets how the training data will be transformed.
`void` | `setKernel(Kernel value)` Sets the kernel to use.
`void` | `setNoise(double v)` Set the level of Gaussian Noise.
`void` | `setOptions(java.lang.String[] options)` Parses a given list of options.
`java.lang.String` | `toString()` Prints out the classifier.

Methods inherited from class weka.classifiers.Classifier
`debugTipText, distributionForInstance, forName, getDebug, makeCopies, makeCopy, setDebug`

Methods inherited from class java.lang.Object
`equals, getClass, hashCode, notify, notifyAll, wait, wait, wait`

Field Detail

### FILTER_NORMALIZE

    public static final int FILTER_NORMALIZE

  normalizes the data

  See Also:
    Constant Field Values

### FILTER_STANDARDIZE

    public static final int FILTER_STANDARDIZE

  standardizes the data

  See Also:
    Constant Field Values

### FILTER_NONE

    public static final int FILTER_NONE

  no filter

  See Also:
    Constant Field Values

### TAGS_FILTER

    public static final Tag[] TAGS_FILTER

  The filter to apply to the training data

Constructor Detail

### GaussianProcesses

    public GaussianProcesses()

  the default constructor

Method Detail

### globalInfo

    public java.lang.String globalInfo()

  Returns a string describing classifier

  Returns:
    a description suitable for displaying in the explorer/experimenter gui

### getTechnicalInformation

    public TechnicalInformation getTechnicalInformation()

  Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.

  Specified by:
    `getTechnicalInformation` in interface `TechnicalInformationHandler`
  Returns:
    the technical information about this class

### getCapabilities

    public Capabilities getCapabilities()

  Returns default capabilities of the classifier.

  Specified by:
    `getCapabilities` in interface `CapabilitiesHandler`
  Overrides:
    `getCapabilities` in class `Classifier`
  Returns:
    the capabilities of this classifier
  See Also:
    `Capabilities`

### buildClassifier

    public void buildClassifier(Instances insts)
                         throws java.lang.Exception

  Method for building the classifier.

  Specified by:
    `buildClassifier` in class `Classifier`
  Parameters:
    `insts` - the set of training instances
  Throws:
    `java.lang.Exception` - if the classifier can't be built successfully

### classifyInstance

    public double classifyInstance(Instance inst)
                            throws java.lang.Exception

  Classifies a given instance.

  Overrides:
    `classifyInstance` in class `Classifier`
  Parameters:
    `inst` - the instance to be classified
  Returns:
    the classification
  Throws:
    `java.lang.Exception` - if instance could not be classified successfully

### predictInterval

    public double[][] predictInterval(Instance inst,
                                      double confidenceLevel)
                               throws java.lang.Exception

  Predicts a confidence interval for the given instance and confidence level.

  Specified by:
    `predictInterval` in interface `IntervalEstimator`
  Parameters:
    `inst` - the instance to make the prediction for
    `confidenceLevel` - the percentage of cases the interval should cover
  Returns:
    a 1*2 array that contains the boundaries of the interval
  Throws:
    `java.lang.Exception` - if interval could not be estimated successfully

### getStandardDeviation

    public double getStandardDeviation(Instance inst)
                                throws java.lang.Exception

  Gives the variance of the prediction at the given instance

  Parameters:
    `inst` - the instance to get the variance for
  Returns:
    tha variance
  Throws:
    `java.lang.Exception` - if computation fails

### listOptions

    public java.util.Enumeration listOptions()

  Returns an enumeration describing the available options.

  Specified by:
    `listOptions` in interface `OptionHandler`
  Overrides:
    `listOptions` in class `Classifier`
  Returns:
    an enumeration of all the available options.

### setOptions

    public void setOptions(java.lang.String[] options)
                    throws java.lang.Exception

  Parses a given list of options.

  Valid options are:

       -D
        If set, classifier is run in debug mode and
        may output additional info to the console

       -L <double>
        Level of Gaussian Noise.
        (default: 1.0)

       -N
        Whether to 0=normalize/1=standardize/2=neither.
        (default: 0=normalize)

       -K <classname and parameters>
        The Kernel to use.
        (default: weka.classifiers.functions.supportVector.PolyKernel)

       Options specific to kernel weka.classifiers.functions.supportVector.RBFKernel:

       -D
        Enables debugging output (if available) to be printed.
        (default: off)

       -no-checks
        Turns off all checks - use with caution!
        (default: checks on)

       -C <num>
        The size of the cache (a prime number), 0 for full cache and
        -1 to turn it off.
        (default: 250007)

       -G <num>
        The Gamma parameter.
        (default: 0.01)

  Specified by:
    `setOptions` in interface `OptionHandler`
  Overrides:
    `setOptions` in class `Classifier`
  Parameters:
    `options` - the list of options as an array of strings
  Throws:
    `java.lang.Exception` - if an option is not supported

### getOptions

    public java.lang.String[] getOptions()

  Gets the current settings of the classifier.

  Specified by:
    `getOptions` in interface `OptionHandler`
  Overrides:
    `getOptions` in class `Classifier`
  Returns:
    an array of strings suitable for passing to setOptions

### kernelTipText

    public java.lang.String kernelTipText()

  Returns the tip text for this property

  Returns:
    tip text for this property suitable for displaying in the explorer/experimenter gui

### getKernel

    public Kernel getKernel()

  Gets the kernel to use.

  Returns:
    the kernel

### setKernel

    public void setKernel(Kernel value)

  Sets the kernel to use.

  Parameters:
    `value` - the new kernel

### filterTypeTipText

    public java.lang.String filterTypeTipText()

  Returns the tip text for this property

  Returns:
    tip text for this property suitable for displaying in the explorer/experimenter gui

### getFilterType

    public SelectedTag getFilterType()

  Gets how the training data will be transformed. Will be one of FILTER_NORMALIZE, FILTER_STANDARDIZE, FILTER_NONE.2200Instances

  Returns:
    the filtering mode

### setFilterType

    public void setFilterType(SelectedTag newType)

  Sets how the training data will be transformed. Should be one of FILTER_NORMALIZE, FILTER_STANDARDIZE, FILTER_NONE.

  Parameters:
    `newType` - the new filtering mode

### noiseTipText

    public java.lang.String noiseTipText()

  Returns the tip text for this property

  Returns:
    tip text for this property suitable for displaying in the explorer/experimenter gui

### getNoise

    public double getNoise()

  Get the value of noise.

  Returns:
    Value of noise.

### setNoise

    public void setNoise(double v)

  Set the level of Gaussian Noise.

  Parameters:
    `v` - Value to assign to noise.

### toString

    public java.lang.String toString()

  Prints out the classifier.

  Overrides:
    `toString` in class `java.lang.Object`
  Returns:
    a description of the classifier as a string

### getRevision

    public java.lang.String getRevision()

  Returns the revision string.

  Specified by:
    `getRevision` in interface `RevisionHandler`
  Returns:
    the revision

### main

    public static void main(java.lang.String[] argv)

  Main method for testing this class.

  Parameters:
    `argv` - the commandline parameters

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